,Chaos game representation (CGR)-walk model for DNA sequences

来源 :中国物理B(英文版) | 被引量 : 0次 | 上传用户:hayyangxiong
下载到本地 , 更方便阅读
声明 : 本文档内容版权归属内容提供方 , 如果您对本文有版权争议 , 可与客服联系进行内容授权或下架
论文部分内容阅读
Chaos game representation (CGR) is an iterative mapping technique that processes sequences of units, such as nucleotides in a DNA sequence or amino acids in a protein, in order to determine the coordinates of their positions in a continuous space. This distribution of positions has two features: one is unique, and the other is source sequence that can be recovered from the coordinates so that the distance between positions may serve as a measure of similarity between the corresponding sequences. A CGR-walk model is proposed based on CGR coordinates for the DNA sequences. The CGR coordinates are converted into a time series, and a long-memory ARFIMA (p, d, q) model, where ARFIMA stands for autoregressive fractionally integrated moving average, is introduced into the DNA sequence analysis. This model is applied to simulating real CGR-walk sequence data of ten genomic sequences. Remarkably long-range correlations are uncovered in the data, and the results from these models are reasonably fitted with those from the ARFIMA (p, d, q) model.
其他文献
北京农业大学培育的高油1号玉米,生育期112~115天.亩产籽粒400公斤以上,籽粒含油率达8%以上,抗病、抗倒伏,是粮、油、饲兼用的优质高产玉米。高油玉米的最大特点是胚大而重,胚
“七五”期间,江西省棉花研究所在上级主管和业务部门的关心重视和有关协作单位的大力支持下,全所科技人员在“六五”工作的基础上,本着艰苦创业的精神,同心协力,勤奋工作,
京啤B121-5系中国农科院,品资所于1984年用美国“Manker”多棱大麦作母本,与日本韭崎10号作父本杂交,连续4年选择(温室加代与大田种植),经5年产量试验观察鉴定选育而成。京
This paper presents a novel approach to hyperchvos control of hyperchaotic systems based on impulsive control and the Takagi-Sugeno (T-S) fuzzy model. In this s