Genome-wide prediction in a hybrid maize population adapted to Northwest China

来源 :作物学报(英文版) | 被引量 : 0次 | 上传用户:yuxia21
下载到本地 , 更方便阅读
声明 : 本文档内容版权归属内容提供方 , 如果您对本文有版权争议 , 可与客服联系进行内容授权或下架
论文部分内容阅读
Genome-wide prediction is a promising approach to boost selection gain in hybrid breeding. Our main objective was to evaluate the potential and limits of genome-wide prediction to identify superior hybrid combinations adapted to Northwest China. A total of 490 hybrids derived from crosses among 119 inbred lines from the Shaan A and Shaan B heterotic patt were used for genome-wide prediction of ten agronomic traits. We tested eight different statistical prediction models considering additive (A) effects and in addition evaluated the impact of dominance (D) and epistasis (E) on the prediction ability. Employing five-fold cross validation, we show that the average prediction ability ranged from 0.386 to 0.794 across traits and models. Six parametric methods, i.e. ridge regression, LASSO, Elastic Net, Bayes B, Bayes C and reproducing kel Hilbert space (RKHS) approach, displayed a very similar prediction ability for each trait and two non-parametric methods (random forest and support vector machine) had a higher prediction performance for the trait rind penetrometer resistance of the third intode above ground (RPR_TIAG). The models of A+D RKHS and A+D+E RKHS were slightly better for predicting traits with a relatively high non-additive variance. Integrating trait-specific markers into the A+D RKHS model improved the prediction ability of grain yield by 3%, from 0.528 to 0.558. Of all 6328 potential hybrids, selection of the top 44 hybrids would lead to a 6%increase in grain yield compared with Zhengdan 958, a commercially successful hybrid variety. In conclusion, our results substantiate the value of genome-wide prediction for hybrid breeding and suggest dozens of promising single crosses for developing high-yielding hybrids for Northwest China.
其他文献
从紧急响应到防疫防护,从保供兜底到爱心支援,中国石油浙江销售以较快的速度织密战“疫”安全网,全心全力防护客户和员工身体健康与生命安全.浙江销售发布《加油站防疫指导手
期刊
CRISPR-Cas12a offers a convenient tool for multiplex genome editing in rice. However, the CRISPR-Cas12a system displays variable editing efficiency across genom
期刊
期刊
期刊
随着社会经济的快速发展,人们的生活水平不断提高,公共服务的数量和质量越来越受到人们的关注。在我国,公共服务不仅是政府的四大基本职能之一,更是普通民众的基本需要。在公
随着农村社会经济的发展,农村居民对农村公共产品与服务的需求也日益多样化,无论是需求的内容还是结构都发生了巨大的变化。而建设社会主义新农村是目前我国政府解决“三农”
目的评价低温等离子射频消融术治疗颈椎间盘突出症合并脊髓缺血老年患者的临床疗效。方法颈椎间盘突出症患者20例,年龄65~79岁,体重51~89 kg,ASA分级Ⅰ或Ⅱ级,按照是否合并脊髓缺血分为2组(n=10):颈椎间盘突出症组(C组)和颈椎间盘突出症合并脊髓缺血组(C+I组)。在C型臂下2组行颈椎间盘低温等离子射频消融术。记录术中神经损伤和血管损伤等不良反应的发生情况。分别于术前1 d和术后3 d
政府雇员制是我国地方政府试行的一种政府部门人力资源制度,是对现有人事制度的一种补充。政府雇员制满足了我国政府对专业技术人才的需求。政府雇员制的试行是对传统公务员
期刊