This work presents the implementation of fuzzy logic control (FLC) on a microbial electrolysis cell (MEC).Hydrogen has been touted as a potential alternative source of energy to the depleting fossil fuels.MEC is one of the most extensively studied method of hydrogen production.The utilization of biowaste as its substrate by MEC promotes the waste to energy initiative.The hydrogen production within the MEC sys-tem,which involves microbial interaction contributes to the system\'s nonlinearity.Taking into account of the high complexity of MEC system,a precise process control system is required to ensure a well-controlled biohydrogen production flow rate and storage application inside a tank.Proportional-derivative-integral (PID) controller has been one of the pioneer control loop mechanism.However,it lacks the capability to adapt properly in the presence of disturbance.An advanced process control mech-anism such as the FLC has proven to be a better solution to be implemented on a nonlinear system due to its similarity in human-natured thinking.The performance of the FLC has been evaluated based on its implementation on the MEC system through various control schemes progressively.Similar evaluations include the performance of Proportional-Integral (PI) and PID controller for comparison purposes.The tracking capability of FLC is also accessed against another advanced controller that is the model predic-tive controller (MPC).One of the key findings in this work is that the FLC resulted in a desirable hydrogen output via MEC over the PI and PID controller in terms of shorter settling time and lesser overshoot.