Linear programming methods for the treatment of small perturbations of amide planes

来源 :The XXIX International Colloquium on Group-Theoretical Metho | 被引量 : 0次 | 上传用户:hy3508
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  The existence of Amide Planes of Protein Structures has been confirmed recently by a Mathematical Programming Approach [1].The proposed cost function is the expression of a dihedral angle in terms of three variables: two bond angles,and the angle corresponding to alpha-carbon geometry.The average value of this dihedral angle is calculated to be 180 degrees by exhaustive statistical analysis of dipeptide structures [2] and this was the first indirect confirmation of Paulings insight on the existence of amide planes of Protein Structure [3].In this work we show how the methods of Mathematical Programing can be applied to derive the same average value which we believe to be the first of a series of introductory results belonging to a new modelling process of biomolecular structure.
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